PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g15410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 271aa    MW: 30637.3 Da    PI: 8.2228
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g15410genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.6e-06112131120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++C++C+k+F+r  nL+ H+
  CA04g15410 112 FSCHICHKTFNRYNNLQMHM 131
                 89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.78E-5107134No hitNo description
PROSITE profilePS5015710.388112139IPR007087Zinc finger, C2H2
SMARTSM003550.55112134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-4112131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SMARTSM00355100159191IPR015880Zinc finger, C2H2-like
SMARTSM00355150196216IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEGSYFASSS NVENQIEPYD FFADKTQNAF EFLSLSQPCD NIDKISNDQE NPNWDNNKED  60
DVTVALHIGL PNSSNNIIPT DHHNQGDGNI IGAATQYWIP TPSQILVGFT HFSCHICHKT  120
FNRYNNLQMH MWGHGSQYRK GPESLKGTQP RAMLGIPCYC CEEGCKNNIN HPRAKPLKDF  180
RTLQTHYKRK HGTKRFACRK CGKCLAVKGD WRTHEKNCGK RWLCSCGSDF KHKRSLKDHI  240
ASFGEGHGPC PPTNNSFEGI EVQRAGNFFV *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755161e-134HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016570849.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG31e-106TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLK4BTX01e-168K4BTX0_SOLLC; Uncharacterized protein
STRINGSolyc04g074320.1.11e-168(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132641517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-107C2H2 family protein